To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Biobase")

In most cases, you don't need to download the package archive at all.

Biobase

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Biobase.

Biobase: Base functions for Bioconductor

Bioconductor version: 2.8

Functions that are needed by many other packages or which replace R functions.

Author: R. Gentleman, V. Carey, M. Morgan, S. Falcon

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

Citation (from within R, enter citation("Biobase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Biobase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Biobase")

 

PDF BiobaseDevelopment.pdf
PDF Bioconductor.pdf
PDF esApply.pdf
PDF ExpressionSetIntroduction.pdf
PDF HowTo.pdf
PDF Qviews.pdf
PDF   Reference Manual

Details

biocViews Bioinformatics, Infrastructure, Software
Version 2.12.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils
Imports
LinkingTo
Suggests tools, tkWidgets, ALL
SystemRequirements
Enhances
URL
Depends On Me a4Base, a4Core, ACME, affy, affycomp, affycompData, affyContam, affycoretools, affylmGUI, affyPLM, affyQCReport, Agi4x44PreProcess, AgiMicroRna, ALL, altcdfenvs, annaffy, AnnotationDbi, ArrayExpress, arrayMvout, ArrayTools, beadarray, beadarraySNP, bgx, BicARE, BiocCaseStudies, bioDist, BioMVCClass, BioNet, bladderbatch, Category, CCl4, cellHTS, cellHTS2, ceuhm3, CGHbase, CGHcall, CGHregions, charm, cheung2010, clippda, CLL, clusterStab, CMA, cn.farms, codelink, colonCA, convert, copa, crlmm, davidTiling, ddCt, DESeq, DFP, DLBCL, dressCheck, dualKS, dyebias, EBarrays, edd, eisa, encoDnaseI, ExiMiR, factDesign, fibroEset, flowClust, flowCore, frma, gaga, gaschYHS, GeneAnswers, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSelector, GeneSpring, GeneTraffic, genoset, GEOquery, GGBase, GGdata, GGtools, golubEsets, goProfiles, GOstats, GSEABase, GSEAlm, GSVAdata, harbChIP, HELP, hmyriB36, hopach, HTqPCR, humanStemCell, idiogram, iterativeBMA, Iyer517, kidpack, leeBamViews, LMGene, lumi, lumiBarnes, lungExpression, LVSmiRNA, macat, maDB, MAQCsubset, MAQCsubsetAFX, MAQCsubsetILM, maSigPro, MergeMaid, methylumi, Mfuzz, MiChip, MLInterfaces, MSnbase, Mulcom, multtest, mvoutData, Neve2006, oligoClasses, oneChannelGUI, ontoTools, OrderedList, OTUbase, OutlierD, PAnnBuilder, panp, pcaMethods, pcot2, pdInfoBuilder, pdmclass, PGSEA, phenoTest, plgem, PLPE, prada, ProData, PROMISE, puma, pumadata, qpcrNorm, R453Plus1Toolbox, RbcBook1, rbsurv, reb, RefPlus, Resourcerer, rHVDM, Ringo, RMAGEML, Rmagpie, rMAT, RNAinteract, rnaSeqMap, RpsiXML, RTCA, RTools4TB, Rtreemix, safe, siggenes, simpleaffy, SNPchip, SpeCond, SpikeInSubset, spkTools, splicegear, TDARACNE, tigre, tilingArray, topGO, tspair, twilight, vsn, webbioc, XDE, yeastCC
Imports Me ABarray, aCGH, adSplit, affy, affyQCReport, AgiMicroRna, annotate, AnnotationDbi, annotationTools, ArrayExpressHTS, arrayQualityMetrics, ArrayTools, attract, betr, biocViews, BioSeqClass, Category, CGHnormaliter, charm, ChromHeatMap, ConsensusClusterPlus, cycle, EBarrays, ecolitk, ExiMiR, farms, flowCore, flowFlowJo, flowFP, flowMeans, flowStats, flowUtils, flowViz, frma, frmaTools, gcrma, genefilter, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, GeneSpring, GeneTraffic, genomeIntervals, genoset, GEOsubmission, girafe, globaltest, GOstats, GSEABase, GSRI, GSVA, Harshlight, HEM, hopach, HTqPCR, iFlow, imageHTS, lapmix, LiquidAssociation, lumi, maanova, makecdfenv, makePlatformDesign, maSigPro, mBPCR, MCRestimate, metaArray, methylumi, MiChip, MiPP, multiscan, oligo, OrderedList, PAnnBuilder, panp, PCpheno, plateCore, plier, ppiStats, prada, PROMISE, puma, pvac, qpgraph, R453Plus1Toolbox, rflowcyt, Rmagpie, rMAT, Rtreemix, safe, SAGx, ShortRead, simpleaffy, SLGI, SNPchip, spkTools, splicegear, TEQC, tigre, timecourse, topGO, twilight, webbioc, XDE, xmapcore
Suggests Me annotate, betr, BiocCaseStudies, biocViews, breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, BSgenome, Category, ccTutorial, dyebiasexamples, estrogen, farms, genefilter, geneplotter, GlobalAncova, globaltest, hexbin, les, nem, pkgDepTools, ROC, survcomp, tkWidgets, vbmp, widgetTools, yeastExpData, yeastRNASeq
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Biobase_2.12.2.tar.gz
Windows Binary Biobase_2.12.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Biobase/tree/release-2.8
Package Short Url http://bioconductor.org/packages/Biobase/
Package Downloads Report Download Stats

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