PGSEA

Parametric Gene Set Enrichment Analysis

Bioconductor version: 2.8

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PGSEA")

To cite this package in a publication, start R and enter:

    citation("PGSEA")

Documentation

PDF R Script HOWTO: PGSEA
PDF R Script HOWTO: PGSEA Example Workflow
PDF   Reference Manual

Details

biocViews Microarray
Depends GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.26.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source PGSEA_1.26.0.tar.gz
Windows Binary PGSEA_1.26.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary PGSEA_1.26.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center