ccTutorial

Data package for ChIP-chip tutorial

Bioconductor version: 2.8

This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.

Author: Joern Toedling, Wolfgang Huber

Maintainer: Joern Toedling <joern.toedling at curie.fr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ccTutorial")

To cite this package in a publication, start R and enter:

    citation("ccTutorial")

Documentation

PDF R Script A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF R Script Supplement to A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF   Reference Manual

Details

biocViews ExperimentData, ChIPchipData
Depends R (>= 2.9.0), Ringo(>= 1.9.8), affy(>= 1.23.4), topGO(>= 1.13.1)
Imports
Suggests biomaRt, Biobase(>= 2.5.5), xtable
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.17

Package Downloads

Package Source ccTutorial_1.0.17.tar.gz
Windows Binary ccTutorial_1.0.17.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ccTutorial_1.0.17.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center