MCRestimate

Misclassification error estimation with cross-validation

Bioconductor version: 2.8

This package includes a function for combining preprocessing and classification methods to calculate misclassification errors

Author: Marc Johannes, Markus Ruschhaupt, Holger Froehlich, Ulrich Mansmann, Andreas Buness, Patrick Warnat, Wolfgang Huber, Axel Benner, Tim Beissbarth

Maintainer: Marc Johannes <m.johannes at dkfz.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MCRestimate")

To cite this package in a publication, start R and enter:

    citation("MCRestimate")

Documentation

PDF R Script HOW TO use MCRestimate
PDF   Reference Manual

Details

biocViews Bioinformatics, Classification
Depends R (>= 2.7.2), golubEsets(>= 1.4.6)
Imports e1071 (>= 1.5-12), pamr(>= 1.22), randomForest (>= 3.9-6), RColorBrewer (>= 0.1-3), Biobase(>= 2.5.5), graphics, grDevices, stats, utils
Suggests xtable (>= 1.2-1), ROC(>= 1.8.0), genefilter(>= 1.12.0), gpls(>= 1.6.0)
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 2.8.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source MCRestimate_2.8.0.tar.gz
Windows Binary MCRestimate_2.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary MCRestimate_2.8.0.tgz
Package Downloads Report Download Stats

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