affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: 2.8

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at med.umich.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affycoretools")

To cite this package in a publication, start R and enter:

    citation("affycoretools")

Documentation

PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF   Reference Manual

Details

biocViews ReportWriting, Microarray, OneChannel, GeneExpression
Depends affy, Biobase, GO.db, KEGG.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi
Suggests affydata, hgfocuscdf, rgl
System Requirements
License Artistic-2.0
URL
Depends On Me AgiMicroRna
Imports Me
Suggests Me Agi4x44PreProcess
Version 1.24.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source affycoretools_1.24.0.tar.gz
Windows Binary affycoretools_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary affycoretools_1.24.0.tgz
Package Downloads Report Download Stats

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