RNAinteract

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: 2.8

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer <bernd.fischer at embl.de>

Maintainer: Bernd Fischer <bernd.fischer at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RNAinteract")

To cite this package in a publication, start R and enter:

    citation("RNAinteract")

Documentation

PDF R Script RNAinteract
PDF   Reference Manual

Details

biocViews CellBasedAssays, QualityControl, Preprocessing, Visualization
Depends R (>= 2.12.0), abind, locfit, Biobase
Imports RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, qvalue, splots(>= 1.13.12)
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me RNAinteractMAPK
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source RNAinteract_1.0.0.tar.gz
Windows Binary RNAinteract_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RNAinteract_1.0.0.tgz
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