ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 2.8

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at>, Andrew Tikhonov <andrew at>

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PDF R Script ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF   Reference Manual


biocViews RNAseq, Sequencing, HighThroughputSequencing
Depends sampling, Rsamtools(>= 1.3.32), snow
Imports Biobase, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.8 (R-2.13)

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Package Source ArrayExpressHTS_1.2.0.tar.gz
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