mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: 2.8

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita <paola at idsia.ch>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <paola at idsia.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mBPCR")

To cite this package in a publication, start R and enter:

    citation("mBPCR")

Documentation

PDF R Script mBPCR
PDF   Reference Manual

Details

biocViews aCGH, SNP, Microarray, CopyNumberVariants, Bioinformatics
Depends oligoClasses, SNPchip
Imports Biobase
Suggests xtable
System Requirements
License GPL (>= 2)
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me
Version 1.6.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source mBPCR_1.6.0.tar.gz
Windows Binary mBPCR_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary mBPCR_1.6.0.tgz
Package Downloads Report Download Stats

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