aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 2.8

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("aCGH")

To cite this package in a publication, start R and enter:

    citation("aCGH")

Documentation

PDF R Script aCGH Overview
PDF   Reference Manual

Details

biocViews CopyNumberVariants, DataImport, Genetics
Depends R (>= 1.8.0), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Suggests
System Requirements
License GPL-2
URL
Depends On Me ADaCGH2
Imports Me snapCGH
Suggests Me beadarraySNP
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source aCGH_1.30.0.tar.gz
Windows Binary aCGH_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary aCGH_1.30.0.tgz
Package Downloads Report Download Stats

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