OTUbase

Provides structure and functions for the analysis of OTU data

Bioconductor version: 2.8

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("OTUbase")

To cite this package in a publication, start R and enter:

    citation("OTUbase")

Documentation

PDF R Script An introduction to OTUbase
PDF   Reference Manual

Details

biocViews Bioinformatics, HighThroughputSequencingData, DataImport
Depends R (>= 2.9.0), methods, ShortRead(>= 1.4.0), Biobase, vegan
Imports Biostrings, ShortRead, IRanges
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me mcaGUI
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source OTUbase_1.2.0.tar.gz
Windows Binary OTUbase_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary OTUbase_1.2.0.tgz
Package Downloads Report Download Stats

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