imageHTS

Analysis of high-throughput microscopy-based screens

Bioconductor version: 2.8

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote screen data, facilitating the dissemination of high-throughput microscopy-based screens.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Gregoire Pau <gregoire.pau at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("imageHTS")

To cite this package in a publication, start R and enter:

    citation("imageHTS")

Documentation

PDF R Script Analysis of high-throughput microscopy-based screens with imageHTS
PDF   Reference Manual

Details

biocViews CellBasedAssays, Visualization, Preprocessing
Depends R (>= 2.9.0), EBImage(>= 3.7.1), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Suggests
System Requirements
License LGPL-2.1
URL
Depends On Me phenoDist
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source imageHTS_1.2.0.tar.gz
Windows Binary imageHTS_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary
Package Downloads Report Download Stats

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