beadarraySNP

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: 2.8

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("beadarraySNP")

To cite this package in a publication, start R and enter:

    citation("beadarraySNP")

Documentation

PDF R Script beadarraySNP.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariants, SNP, GeneticVariability, TwoChannel, Preprocessing, DataImport
Depends methods, Biobase(>= 2.5.5), quantsmooth
Imports
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.18.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source beadarraySNP_1.18.0.tar.gz
Windows Binary beadarraySNP_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary beadarraySNP_1.18.0.tgz
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