Gene Set Regulation Index

Bioconductor version: 2.8

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at>

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To cite this package in a publication, start R and enter:



PDF R Script Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF   Reference Manual


biocViews Microarray, Transcription, DifferentialExpression, Genetics, Bioinformatics
Depends R (>= 2.12.1), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests limma, hgu95av2.db
System Requirements
License GPL-3
Depends On Me
Imports Me
Suggests Me
Version 2.0.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source GSRI_2.0.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSRI_2.0.0.tgz
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