GSRI

Gene Set Regulation Index

Bioconductor version: 2.8

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at fdm.uni-freiburg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSRI")

To cite this package in a publication, start R and enter:

    citation("GSRI")

Documentation

PDF R Script Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF   Reference Manual

Details

biocViews Microarray, Transcription, DifferentialExpression, Genetics, Bioinformatics
Depends R (>= 2.12.1), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests limma, hgu95av2.db
System Requirements
License GPL-3
URL http://www.fdmold.uni-freiburg.de/~jgehring/
Depends On Me
Imports Me
Suggests Me
Version 2.0.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source GSRI_2.0.0.tar.gz
Windows Binary GSRI_2.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSRI_2.0.0.tgz
Package Downloads Report Download Stats

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