XDE

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 2.8

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("XDE")

To cite this package in a publication, start R and enter:

    citation("XDE")

Documentation

PDF R Script XDE Vignette
PDF xdeLIN.pdf
PDF R Script XdeParameterClass Vignette
PDF   Reference Manual

Details

biocViews Microarray, Bioinformatics, DifferentialExpression
Depends R (>= 2.9.0), Biobase(>= 2.5.5), methods, graphics
Imports Biobase, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils
Suggests siggenes, genefilter, MASS, RColorBrewer, GeneMeta
System Requirements
License LGPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.12.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source XDE_1.12.0.tar.gz
Windows Binary XDE_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary XDE_1.12.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center