xmapcore

Core access to the xmap database (installed separately)

Bioconductor version: 2.8

xmapcore allows mapping between genetic features and any available Affymetrix Exon arrays for Homo Sapiens, Mus Musculus, Rattus Norvegicus and Schizosaccharomyces Pombe.

Author: Tim Yates <tyates at picr.man.ac.uk>

Maintainer: Tim Yates <tyates at picr.man.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("xmapcore")

To cite this package in a publication, start R and enter:

    citation("xmapcore")

Documentation

PDF cookbook.pdf
PDF SplicingIndexExample.pdf
PDF R Script xmapcore installation instruction
PDF R Script xmapcore primer
PDF   Reference Manual

Details

biocViews Annotation, Bioinformatics, Microarray, OneChannel, ReportWriting, Transcription, Visualization
Depends R (>= 2.8.0), methods, IRanges
Imports DBI, RMySQL (>= 0.6-0), digest, Biobase
Suggests RUnit
System Requirements
License GPL-2
URL http://xmap.picr.man.ac.uk, http://www.bioconductor.org
Depends On Me rnaSeqMap
Imports Me
Suggests Me
Version 1.6.2
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source xmapcore_1.6.2.tar.gz
Windows Binary
MacOS 10.5 (Leopard) binary xmapcore_1.6.2.tgz
Package Downloads Report Download Stats

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