Category

Category Analysis

Bioconductor version: 2.8

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Category")

To cite this package in a publication, start R and enter:

    citation("Category")

Documentation

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual

Details

biocViews Bioinformatics, Annotation, GO, Pathways
Depends AnnotationDbi(>= 0.1.15), Biobase(>= 1.15.29)
Imports graph, methods, Biobase(>= 1.15.29), AnnotationDbi(>= 0.1.15), RBGL, GSEABase, genefilter, annotate(>= 1.15.6), stats, utils
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods
System Requirements
License Artistic-2.0
URL
Depends On Me eisa, GOstats, PCpheno
Imports Me cellHTS2, GOstats, PCpheno, phenoTest, ppiStats
Suggests Me BiocCaseStudies, cellHTS, GSEAlm, qpgraph
Version 2.18.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source Category_2.18.0.tar.gz
Windows Binary Category_2.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Category_2.18.0.tgz
Package Downloads Report Download Stats

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