genomeIntervals

Operations on genomic intervals

Bioconductor version: 2.8

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at embl.de>, Joern Toedling, Richard Bourgon

Maintainer: Julien Gagneur <gagneur at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genomeIntervals")

To cite this package in a publication, start R and enter:

    citation("genomeIntervals")

Documentation

PDF R Script Overview of the genomeIntervals package.
PDF   Reference Manual

Details

biocViews DataImport, Infrastructure, Genetics
Depends R (>= 2.8.0), methods, intervals (>= 0.12.2)
Imports methods, Biobase
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me girafe
Imports Me
Suggests Me
Version 1.8.0
Since Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source genomeIntervals_1.8.0.tar.gz
Windows Binary genomeIntervals_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary genomeIntervals_1.8.0.tgz
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