maanova

Tools for analyzing Micro Array experiments

Bioconductor version: 2.8

Analysis of N-dye Micro Array experiment using mixed model effect. Containing analysis of variance, permutation and bootstrap, cluster and consensus tree.

Author: Hao Wu, modified by Hyuna Yang and Keith Sheppard with ideas from Gary Churchill, Katie Kerr and Xiangqin Cui.

Maintainer: Keith Sheppard <keith.sheppard at jax.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("maanova")

To cite this package in a publication, start R and enter:

    citation("maanova")

Documentation

PDF abf1fig.pdf
PDF hckidney.pdf
PDF R Script R/maanova HowTo
PDF vgprofile.pdf
PDF   Reference Manual

Details

biocViews Microarray, DifferentialExpression, Clustering
Depends R (>= 2.7.0)
Imports Biobase, graphics, grDevices, methods, stats, utils
Suggests qvalue, snow
System Requirements
License GPL (>= 2)
URL http://research.jax.org/faculty/churchill
Depends On Me
Imports Me
Suggests Me
Version 1.22.0
Since Bioconductor 1.7 (R-2.2)

Package Downloads

Package Source maanova_1.22.0.tar.gz
Windows Binary maanova_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary maanova_1.22.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center