OrderedList

Similarities of Ordered Gene Lists

Bioconductor version: 2.8

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("OrderedList")

To cite this package in a publication, start R and enter:

    citation("OrderedList")

Documentation

PDF bcb_logo.pdf
PDF R Script Similarities of Ordered Gene Lists
PDF   Reference Manual

Details

biocViews Microarray, DifferentialExpression, MultipleComparisons
Depends R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods
Imports Biobase, graphics, methods, stats, twilight
Suggests
System Requirements
License GPL (>= 2)
URL http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version 1.24.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source OrderedList_1.24.0.tar.gz
Windows Binary OrderedList_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary OrderedList_1.24.0.tgz
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