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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cn.farms")
In most cases, you don't need to download the package archive at all.
cn.farms
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see cn.farms.
cn.farms - Factor Analysis for copy number estimation
Bioconductor version: 2.8
This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze all existing Affymetrix (10K-SNP6.0) array types, supports high-performance computing using snow and ff.
Author: Andreas Mitterecker <mitterecker at bioinf.jku.at>, Djork-Arne Clevert <okko at clevert.de>
Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>, Djork-Arne Clevert <okko at clevert.de>
Citation (from within R,
enter citation("cn.farms")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cn.farms")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cn.farms")
| cn.farms.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, CopyNumberVariants, Microarray, Software |
| Version | 1.1.12 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 2.11), Biobase, methods, ff, oligoClasses, snowfall |
| Imports | DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice |
| LinkingTo | |
| Suggests | pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6 |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioinf.jku.at/software/cnfarms/cnfarms.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cn.farms_1.1.12.tar.gz |
| Windows Binary | cn.farms_1.1.12.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/cn.farms/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/cn.farms/ |
| Package Downloads Report | Download Stats |
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