Gene set enrichment data structures and methods

Bioconductor version: 2.8

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Biocore Team c/o BioC user list <bioconductor at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to GSEABase
PDF   Reference Manual


biocViews Infrastructure, Bioinformatics
Depends R (>= 2.6.0), Biobase, annotate, methods, graph
Imports annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests hgu95av2.db, GO.db,
System Requirements
License Artistic-2.0
Depends On Me BicARE, GSVAdata, HTSanalyzeR, PROMISE
Imports Me Category, cellHTS2, GGtools, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE
Suggests Me BiocCaseStudies, gage, GGtools, GlobalAncova, globaltest, GSEAlm, PGSEA, phenoTest
Version 1.14.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source GSEABase_1.14.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary GSEABase_1.14.0.tgz
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