pvac

PCA-based gene filtering for Affymetrix arrays

Bioconductor version: 2.8

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Author: Jun Lu and Pierre R. Bushel

Maintainer: Jun Lu <lujun at niehs.nih.gov>, Pierre R. Bushel <bushel at niehs.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pvac")

To cite this package in a publication, start R and enter:

    citation("pvac")

Documentation

PDF density.pdf
PDF R Script PCA-based gene filtering for Affymetrix GeneChips
PDF   Reference Manual

Details

biocViews Bioinformatics, Microarray, OneChannel, QualityControl
Depends R (>= 2.8.0)
Imports affy(>= 1.20.0), stats, Biobase
Suggests pbapply, affydata, ALLMLL, genefilter
System Requirements
License LGPL (>= 2.0)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source pvac_1.0.0.tar.gz
Windows Binary pvac_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pvac_1.0.0.tgz
Package Downloads Report Download Stats

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