leeBamViews

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Bioconductor version: 2.8

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("leeBamViews")

To cite this package in a publication, start R and enter:

    citation("leeBamViews")

Documentation

PDF leeFull-dol.pdf
PDF R Script managing multiple NGS samples with bamViews
PDF   Reference Manual

Details

biocViews HighThroughputSequencing, RNAseq, CellBiology, Genetics, DifferentialExpression
Depends Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, methods
Suggests GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR
System Requirements
License Artistic 2.0
URL
Depends On Me
Imports Me
Suggests Me GenomicRanges
Version 0.99.11

Package Downloads

Package Source leeBamViews_0.99.11.tar.gz
Windows Binary leeBamViews_0.99.11.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary leeBamViews_0.99.11.tgz
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