arrayMvout

multivariate outlier detection for expression array QA

Bioconductor version: 2.8

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayMvout")

To cite this package in a publication, start R and enter:

    citation("arrayMvout")

Documentation

PDF R Script arrayMvout -- multivariate outlier algorithm for expression arrays
PDF arrayMvout-asdad.pdf
PDF arrayMvout-lkadas.pdf
PDF arrayMvout-lkda.pdf
PDF   Reference Manual

Details

biocViews Infrastructure, Bioinformatics, Microarray, QualityControl
Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy, lumi
Imports simpleaffy, mdqc, affyContam
Suggests MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.10.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source arrayMvout_1.10.0.tar.gz
Windows Binary arrayMvout_1.10.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary arrayMvout_1.10.0.tgz
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