pcot2

Principal Coordinates and Hotelling's T-Square method

Bioconductor version: 2.8

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pcot2")

To cite this package in a publication, start R and enter:

    citation("pcot2")

Documentation

PDF HowToUseGeneLocator.pdf
PDF R Script PCOT2 Vignette
PDF   Reference Manual

Details

biocViews Microarray, DifferentialExpression
Depends R (>= 2.0.0), grDevices, Biobase, amap
Imports
Suggests multtest, hu6800.db, KEGG.db, mvtnorm
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source pcot2_1.20.0.tar.gz
Windows Binary pcot2_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pcot2_1.20.0.tgz
Package Downloads Report Download Stats

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