ABarray

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: 2.8

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ABarray")

To cite this package in a publication, start R and enter:

    citation("ABarray")

Documentation

PDF R Script ABarray gene expression
PDF R Script ABarray gene expression GUI interface
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing
Depends
Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils
Suggests limma, LPE
System Requirements
License GPL
URL
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source ABarray_1.20.0.tar.gz
Windows Binary ABarray_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ABarray_1.20.0.tgz
Package Downloads Report Download Stats

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