genoset

Provides classes similar to ExpressionSet for copy number analysis

Bioconductor version: 2.8

Load, manipulate, and plot copynumber and BAF data. GenoSet class extends eSet by adding a "locData" slot for a RangedData object from the IRanges package. This object contains feature genome location data and provides for simple subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data.

Author: Peter M. Haverty

Maintainer: Peter M. Haverty <phaverty at gene.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genoset")

To cite this package in a publication, start R and enter:

    citation("genoset")

Documentation

PDF R Script genoset
PDF   Reference Manual

Details

biocViews Infrastructure, DataRepresentation
Depends Biobase, IRanges
Imports Biobase, DNAcopy, graphics, IRanges, methods, stats
Suggests RUnit
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source genoset_1.0.0.tar.gz
Windows Binary genoset_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary genoset_1.0.0.tgz
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