farms

FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: 2.8

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("farms")

To cite this package in a publication, start R and enter:

    citation("farms")

Documentation

PDF R Script Using farms
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, Preprocessing, QualityControl
Depends R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports affy, MASS, Biobase(>= 1.13.41), methods, graphics
Suggests affydata, Biobase, utils
System Requirements
License LGPL (>= 2.1)
URL http://www.bioinf.jku.at/software/farms/farms.html
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source farms_1.4.0.tar.gz
Windows Binary farms_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary farms_1.4.0.tgz
Package Downloads Report Download Stats

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