pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: 2.8

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles

Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdInfoBuilder")

To cite this package in a publication, start R and enter:

    citation("pdInfoBuilder")

Documentation

PDF R Script Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF   Reference Manual

Details

biocViews Annotation, Infrastructure
Depends R (>= 2.11.0), methods, Biobase(>= 2.5.5), RSQLite (>= 0.7-1), affxparser(>= 1.7.3), oligo(>= 1.9.19)
Imports Biostrings(>= 2.13.50), IRanges(>= 1.3.89)
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.16.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source pdInfoBuilder_1.16.0.tar.gz
Windows Binary pdInfoBuilder_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pdInfoBuilder_1.16.0.tgz
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