MergeMaid

Merge Maid

Bioconductor version: 2.8

The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.

Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu> Elizabeth Garrett <esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>

Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MergeMaid")

To cite this package in a publication, start R and enter:

    citation("MergeMaid")

Documentation

PDF R Script MergeMaid primer
PDF   Reference Manual

Details

biocViews Microarray, DifferentialExpression, Visualization
Depends R (>= 2.2.0), survival, Biobase, MASS, methods
Imports
Suggests
System Requirements
License GPL (>= 2)
URL http://astor.som.jhmi.edu/MergeMaid
Depends On Me
Imports Me metaArray, XDE
Suggests Me oneChannelGUI
Version 2.24.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source MergeMaid_2.24.0.tar.gz
Windows Binary MergeMaid_2.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary MergeMaid_2.24.0.tgz
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