GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: 2.8

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOstats")

To cite this package in a publication, start R and enter:

    citation("GOstats")

Documentation

PDF Hypergeometric tests for less common model organisms
PDF R Script Hypergeometric Tests Using GOstats
PDF R Script Visualizing Data Using GOstats
PDF   Reference Manual

Details

biocViews Bioinformatics, Annotation, GO, MultipleComparisons
Depends Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats
Suggests hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM
System Requirements
License Artistic-2.0
URL
Depends On Me attract, oneChannelGUI
Imports Me affycoretools, attract
Suggests Me BiocCaseStudies, eisa, GSEAlm, HTSanalyzeR, MLP, phenoDist, qpgraph, safe
Version 2.18.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source GOstats_2.18.0.tar.gz
Windows Binary GOstats_2.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GOstats_2.18.0.tgz
Package Downloads Report Download Stats

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