gcrma

Background Adjustment Using Sequence Information

Bioconductor version: 2.8

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gcrma")

To cite this package in a publication, start R and enter:

    citation("gcrma")

Documentation

PDF R Script gcrma1.2
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing
Depends R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils
Imports Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), Biostrings(>= 2.11.32), splines
Suggests affydata, tools, splines, hgu95av2cdf, hgu95av2probe
System Requirements
License LGPL
URL
Depends On Me affyPLM, bgx, simpleaffy, webbioc
Imports Me affycoretools, affyILM, simpleaffy
Suggests Me AffyExpress, ArrayTools, BHC, BiocCaseStudies
Version 2.24.1
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source gcrma_2.24.1.tar.gz
Windows Binary gcrma_2.24.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary gcrma_2.24.1.tgz
Package Downloads Report Download Stats

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