altcdfenvs

alternative CDF environments (aka probeset mappings)

Bioconductor version: 2.8

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("altcdfenvs")

To cite this package in a publication, start R and enter:

    citation("altcdfenvs")

Documentation

PDF R Script affy primer
PDF R Script affy primer
PDF R Script altcdfenvs
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, Preprocessing, Annotation, ProprietaryPlatforms, Transcription
Depends R (>= 2.7), methods, Biobase, affy, makecdfenv, Biostrings, hypergraph
Imports
Suggests plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me Harshlight
Suggests Me
Version 2.14.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source altcdfenvs_2.14.0.tar.gz
Windows Binary altcdfenvs_2.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary altcdfenvs_2.14.0.tgz
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