cellHTS

Analysis of cell-based screens

Bioconductor version: 2.8

Analysis of cell-based RNA interference screens

Author: Wolfgang Huber <huber at ebi.ac.uk>, Ligia Bras <ligia at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>

Maintainer: Ligia Bras <ligia at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cellHTS")

To cite this package in a publication, start R and enter:

    citation("cellHTS")

Documentation

PDF R Script Main vignette: End-to-end analysis of cell-based screens
PDF R Script Supplement: multi-channel assays
PDF R Script Supplement: two-way assays
PDF   Reference Manual

Details

biocViews CellBasedAssays, Visualization
Depends R (>= 2.5.0), prada(>= 1.9.4), RColorBrewer, Biobase(>= 1.11.12), genefilter(>= 1.11.2)
Imports
Suggests Category, GO.db, vsn(>= 2.0.35)
System Requirements
License Artistic-2.0
URL http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me prada
Version 1.22.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source cellHTS_1.22.0.tar.gz
Windows Binary cellHTS_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary cellHTS_1.22.0.tgz
Package Downloads Report Download Stats

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