CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: 2.8

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Sjoerd Vosse and Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

To cite this package in a publication, start R and enter:

    citation("CGHcall")

Documentation

PDF R Script CGHcall
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Visualization
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase
Imports
Suggests
System Requirements
License GPL (http://www.gnu.org/copyleft/gpl.html)
URL
Depends On Me CGHnormaliter
Imports Me CGHnormaliter
Suggests Me
Version 2.12.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source CGHcall_2.12.0.tar.gz
Windows Binary CGHcall_2.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary CGHcall_2.12.0.tgz
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Fred Hutchinson Cancer Research Center