cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.8

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cellHTS2")

To cite this package in a publication, start R and enter:

    citation("cellHTS2")

Documentation

PDF R Script Main vignette (complete version): End-to-end analysis of cell-based screens
PDF R Script Main vignette: End-to-end analysis of cell-based screens
PDF R Script Supplement: enhancer-suppressor screens
PDF R Script Supplement: multi-channel assays
PDF   Reference Manual

Details

biocViews CellBasedAssays, Preprocessing, Visualization
Depends RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports prada, GSEABase, Category
Suggests
System Requirements
License Artistic-2.0
URL http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me coRNAi, HTSanalyzeR, imageHTS
Imports Me HTSanalyzeR, RNAinteract
Suggests Me
Version 2.16.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source cellHTS2_2.16.0.tar.gz
Windows Binary cellHTS2_2.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary cellHTS2_2.16.0.tgz
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