affyQCReport

QC Report Generation for affyBatch objects

Bioconductor version: 2.8

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyQCReport")

To cite this package in a publication, start R and enter:

    citation("affyQCReport")

Documentation

PDF R Script affyQCReport: Methods for Generating Affymetrix QC Reports
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl
Depends Biobase(>= 1.13.16), affy, lattice
Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
System Requirements
License LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies
Version 1.30.0
Since Bioconductor 1.7 (R-2.2)

Package Downloads

Package Source affyQCReport_1.30.0.tar.gz
Windows Binary affyQCReport_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary affyQCReport_1.30.0.tgz
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