RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: 2.8

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RefPlus")

To cite this package in a publication, start R and enter:

    citation("RefPlus")

Documentation

PDF An_Exploration_of_Extensions_to_the_RMA_Algorithm.pdf
PDF Extensions_to_RMA_Algorithm.pdf
PDF R Script RefPlus Manual
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing
Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
Suggests affydata
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.22.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source RefPlus_1.22.0.tar.gz
Windows Binary RefPlus_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RefPlus_1.22.0.tgz
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