ExiMiR

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: 2.8

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExiMiR")

To cite this package in a publication, start R and enter:

    citation("ExiMiR")

Documentation

PDF R Script Description of ExiMiR
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, DualChannel, Preprocessing, GeneExpression, Transcription
Depends R (>= 2.8.0), Biobase(>= 2.5.5), affy(>= 1.26.1)
Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source ExiMiR_1.0.0.tar.gz
Windows Binary ExiMiR_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ExiMiR_1.0.0.tgz
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