GeneAnswers

Integrated Interpretation of Genes

Bioconductor version: 2.8

GeneAnswers provides an integrated tool for biological or medical interpretation of the given one or more groups of genes by means of statistical test.

Author: Gang Feng, Pan Du, Tian Xia, Warren Kibbe and Simon Lin

Maintainer: Gang Feng <g-feng at northwestern.edu> , Pan Du <dupan.mail at gmail.com> and Tian Xia <isutian at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneAnswers")

To cite this package in a publication, start R and enter:

    citation("GeneAnswers")

Documentation

PDF R Script Summarize gene annotations based on collective ontology annotations
PDF R Script GeneAnswers
PDF R Script GeneAnswers web-based visualization module
PDF   Reference Manual

Details

biocViews Infrastructure, DataRepresentation, Visualization, GraphsAndNetworks
Depends R (>= 2.10.0), igraph, RCurl, annotate, Biobase(>= 1.12.0), methods, XML, RSQLite, MASS, rgl, Heatplus, RColorBrewer
Imports graph, Rgraphviz, RBGL, annotate
Suggests GO.db, KEGG.db, biomaRt, AnnotationDbi, org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db
System Requirements
License LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.8.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source GeneAnswers_1.8.0.tar.gz
Windows Binary GeneAnswers_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GeneAnswers_1.8.0.tgz
Package Downloads Report Download Stats

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