geneRecommender

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Bioconductor version: 2.8

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>

Maintainer: Greg Hather <ghather at stat.berkeley.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("geneRecommender")

To cite this package in a publication, start R and enter:

    citation("geneRecommender")

Documentation

PDF R Script Using the geneRecommender Package
PDF   Reference Manual

Details

biocViews Microarray, Clustering
Depends R (>= 1.8.0), Biobase(>= 1.4.22), methods
Imports Biobase, methods, stats
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.24.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source geneRecommender_1.24.0.tar.gz
Windows Binary geneRecommender_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary geneRecommender_1.24.0.tgz
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