GGBase

infrastructure for genetics of gene expression (c) 2008 VJ Carey

Bioconductor version: 2.8

infrastructure for dealing with hapmap SNP reports, GWAS, etc.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GGBase")

To cite this package in a publication, start R and enter:

    citation("GGBase")

Documentation

PDF R Script GGBase overview
PDF R Script smlSet construction overview
PDF R Script snp location metadata overview
PDF   Reference Manual

Details

biocViews SNP, GeneticVariability, Genetics, Bioinformatics
Depends R (>= 2.7.0), methods, Biobase(>= 2.9.0), snpStats(>= 1.1.10), RSQLite
Imports AnnotationDbi
Suggests illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20090506
System Requirements
License Artistic-2.0
URL
Depends On Me ceu1kg, ceuhm3, encoDnaseI, GGdata, GGtools, hmyriB36
Imports Me
Suggests Me ind1KG
Version 3.12.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source GGBase_3.12.0.tar.gz
Windows Binary GGBase_3.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GGBase_3.12.0.tgz
Package Downloads Report Download Stats

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