GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: 2.8

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

To cite this package in a publication, start R and enter:

    citation("GEOquery")

Documentation

PDF R Script GEOquery
PDF   Reference Manual

Details

biocViews Microarray, DataImport, OneChannel, TwoChannel, SAGE
Depends methods, Biobase
Imports XML, RCurl
Suggests limma, RUnit
System Requirements
License GPL-2
URL http://watson.nci.nih.gov/~sdavis
Depends On Me dyebiasexamples, GEOmetadb
Imports Me SRAdb
Suggests Me dyebias, PGSEA
Version 2.19.4
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source GEOquery_2.19.4.tar.gz
Windows Binary GEOquery_2.19.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GEOquery_2.19.4.tgz
Package Downloads Report Download Stats

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