lumiBarnes

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: 2.8

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("lumiBarnes")

To cite this package in a publication, start R and enter:

    citation("lumiBarnes")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, OneChannel, RNAExpressionData, NormalTissue
Depends R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
Suggests
System Requirements
License LGPL
URL
Depends On Me
Imports Me
Suggests Me arrayMvout, lumi
Version 1.3.5

Package Downloads

Package Source lumiBarnes_1.3.5.tar.gz
Windows Binary lumiBarnes_1.3.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary lumiBarnes_1.3.5.tgz
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