RTCA

Open-source toolkit to analyse data from xCELLigence System (RTCA) by Roche

Bioconductor version: 2.8

Import, analyze and visualize data harvested from Roche(R) Xcelligence RTCA systems. The package imports the rich information in real-time cell electrical impedance data into computational and statistical environment R/Bioconductor. As an alternative to commercial software provided by Roche, the RTCA package provides more transformation (normalization) strategies and various visualization tools.

Author: Jitao David Zhang, with input from Ulrich Tschulena, Özgür Sahin and Stefan Wiemann

Maintainer: Jitao David Zhang <j.zhang at dkfz.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RTCA")

To cite this package in a publication, start R and enter:

    citation("RTCA")

Documentation

PDF R Script Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package
PDF R Script RTCAtransformation: Discussion of transformation methods of RTCA data
PDF   Reference Manual

Details

biocViews CellBasedAssays, Infrastructure, Visualization, TimeCourse
Depends methods, stats, graphics, Biobase, RColorBrewer, gtools
Imports
Suggests
System Requirements
License LGPL-3
URL http://code.google.com/p/xcelligence/, http://www.xcelligence.roche.com/, http://www.nextbiomotif.com/Home/scientific-programming
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source RTCA_1.4.0.tar.gz
Windows Binary RTCA_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RTCA_1.4.0.tgz
Package Downloads Report Download Stats

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