TEQC

Quality control for target capture experiments

Bioconductor version: 2.8

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Manuela Hummel <manuela.hummel at crg.es>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TEQC")

To cite this package in a publication, start R and enter:

    citation("TEQC")

Documentation

PDF R Script TEQC
PDF   Reference Manual

Details

biocViews QualityControl, Microarray, HighThroughputSequencing, Bioinformatics, Genetics
Depends IRanges
Imports Biobase, IRanges
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source TEQC_1.0.0.tar.gz
Windows Binary TEQC_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary TEQC_1.0.0.tgz
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