ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: 2.8

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChromHeatMap")

To cite this package in a publication, start R and enter:

    citation("ChromHeatMap")

Documentation

PDF R Script Plotting expression data with ChromHeatMap
PDF   Reference Manual

Details

biocViews Visualization
Depends R (>= 2.9.0), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0), hgu95av2.db
Imports annotate, AnnotationDbi, Biobase, graphics, grDevices, methods, stats, IRanges, rtracklayer
Suggests ALL
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.6.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source ChromHeatMap_1.6.0.tar.gz
Windows Binary ChromHeatMap_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ChromHeatMap_1.6.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center