copa

Functions to perform cancer outlier profile analysis.

Bioconductor version: 2.8

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at med.umich.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("copa")

To cite this package in a publication, start R and enter:

    citation("copa")

Documentation

PDF R Script copa Overview
PDF   Reference Manual

Details

biocViews OneChannel, TwoChannel, DifferentialExpression, Visualization
Depends Biobase, methods
Imports
Suggests colonCA
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source copa_1.20.0.tar.gz
Windows Binary copa_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary copa_1.20.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center