S4 generic functions needed by many Bioconductor packages.
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biocViews |
Infrastructure, Software |
Version |
0.8.0 |
In Bioconductor since |
BioC 2.10 (R-2.15) |
License |
Artistic-2.0 |
Depends |
methods, graphics, stats, parallel |
Imports |
methods, graphics, stats, parallel |
Suggests |
Biobase, IRanges, GenomicRanges, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, RUnit, DESeq2 |
System Requirements |
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URL |
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Depends On Me |
affy, affyPLM, altcdfenvs, AnnotationDbi, AnnotationForge, beadarray, Biobase, Biostrings, BSgenome, bsseq, Category, categoryCompare, ChIPpeakAnno, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, cn.mops, codelink, copynumber, cummeRbund, DESeq, dexus, EDASeq, ensemblVEP, flowQ, geneplotter, genomeIntervals, GenomicFeatures, GenomicRanges, Genominator, genoset, GSEABase, gwascat, htSeqTools, interactiveDisplay, IRanges, minfi, MinimumDistance, MotIV, MSnbase, nucleR, oligo, oligoClasses, PICS, PSICQUIC, PWMEnrich, R453Plus1Toolbox, REDseq, Repitools, rMAT, rsbml, rSFFreader, SeqGSEA, ShortRead, simpleaffy, SplicingGraphs, TEQC, tigre, TSSi, VariantAnnotation, virtualArray, xcms, XVector |
Imports Me |
affyPLM, AllelicImbalance, annmap, annotate, AnnotationDbi, AnnotationForge, AnnotationHub, ArrayExpressHTS, beadarray, bigmemoryExtras, Biobase, biocGraph, Biostrings, biovizBase, BiSeq, Category, cghMCR, ChemmineOB, ChemmineR, chipenrich.data, ChIPpeakAnno, chipseq, ChromHeatMap, cn.farms, cn.mops, crlmm, cummeRbund, curatedOvarianData, DESeq2, DEXSeq, DREAM4, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, epigenomix, fastseg, ffpe, flowClust, flowCore, flowFP, flowMerge, flowQ, flowStats, flowWorkspace, frma, gCMAP, gCMAPWeb, geNetClassifier, GenomicFeatures, GenomicRanges, GGBase, ggbio, GGtools, graph, GSVA, Gviz, hopach, HTSeqGenie, intansv, IRanges, KCsmart, KEGGdzPathwaysGEO, LVSmiRNA, methylumi, MinimumDistance, MiRaGE, MotifDb, MotIV, nucleR, oligo, oligoClasses, OrganismDbi, pcaMethods, PING, plrs, prada, ProCoNA, pRoloc, QuasR, R453Plus1Toolbox, RCytoscape, REDseq, ReportingTools, RGalaxy, Ringo, rMAT, Rsamtools, rsbml, rtracklayer, simpleaffy, SLGI, snpStats, spliceSites, SplicingGraphs, Streamer, tigre, triform, TSSi, UniProt.ws, VariantAnnotation, VariantTools, XDE, XVector |
Suggests Me |
ArrayTV, ASSET, bigmemoryExtras, BiocInstaller, BiocParallel, BiRewire, bumphunter, CAMERA, CellNOptR, CexoR, ChIPpeakAnno, ChIPXpress, clipper, clonotypeR, CNORfeeder, CNORfuzzy, cobindR, ConnectivityMap, dagLogo, DBChIP, DNaseR, ensemblVEP, FGNet, GENE.E, GeneNetworkBuilder, GOstats, GraphPAC, GWASTools, illuminaio, inSilicoMerging, KEGGREST, motifStack, NetSAM, PathNet, pathview, plethy, rBiopaxParser, Rcade, Rgraphviz, ROntoTools, RTN, rTRM, SANTA, SeqArray, SeqVarTools, SpacePAC, STRINGdb, TCC |