source("http://bioconductor.org/biocLite.R")
biocLite("MotifDb")

MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: 2.13

More than 2000 annotated position frequency matrices from five public source, for multiple organisms

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotifDb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

 

PDF	R Script	MotifDb Overview
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GenomicSequence, MotifAnnotation, Software
Version	1.4.1
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0 | file LICENSE
Depends	R (>= 2.15.0), methods, IRanges, Biostrings
Imports	BiocGenerics, rtracklayer
Suggests	RUnit, MotIV, seqLogo
System Requirements
URL
Depends On Me	rTRMui
Imports Me
Suggests Me	motifStack, PWMEnrich, rTRM, vtpnet

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MotifDb_1.4.1.tar.gz
Windows Binary	MotifDb_1.4.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MotifDb_1.4.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats